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    ugpQ glycerophosphodiester phosphodiesterase UgpQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947955, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ugpQ
    Official Full Name
    glycerophosphodiester phosphodiesterase UgpQ
    Primary source
    ECOCYC:EG11050
    Locus tag
    b3449
    See related
    ASAP:ABE-0011264
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3433
    Summary
    Pho regulon. [More information is available at EcoGene: EG11050]. UgpQ is a cytosolic glycerophosphodiester phosphodiesterase with broad substrate specificity . [More information is available at EcoCyc: EG11050].
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    Genomic context

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    Sequence:
    NC_000913.3 (3587370..3588113, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative heat shock chaperone Neighboring gene glutathione hydrolase proenzyme Neighboring gene DUF2756 domain-containing protein YhhA Neighboring gene sn-glycerol 3-phosphate ABC transporter ATP binding subunit Neighboring gene sn-glycerol 3-phosphate ABC transporter membrane subunit UgpE Neighboring gene sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA Neighboring gene sn-glycerol 3-phosphate ABC transporter periplasmic binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (UgpQ) requires Mg2+, Co2+, or Mn2+ for its enzyme activity. Ohshima N, et al. J Bacteriol, 2008 Feb. PMID 18083802, Free PMC Article
    2. Nucleotide sequence of the ugpQ gene encoding glycerophosphoryl diester phosphodiesterase of Escherichia coli K-12. Kasahara M, et al. Nucleic Acids Res, 1989 Apr 11. PMID 2541415, Free PMC Article
    3. Uptake of glycerol-2-phosphate via the ugp-encoded transporter in Escherichia coli K-12. Yang K, et al. J Bacteriol, 2009 Jul. PMID 19429609, Free PMC Article
    4. Nucleotide sequence of the ugp genes of Escherichia coli K-12: homology to the maltose system. Overduin P, et al. Mol Microbiol, 1988 Nov. PMID 3062310
    5. Carbon-starvation induction of the ugp operon, encoding the binding protein-dependent sn-glycerol-3-phosphate transport system in Escherichia coli. Su TZ, et al. Mol Gen Genet, 1991 Nov. PMID 1745236

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that UgpQ has broad substrate specificity toward various glycerophosphodiesters, producing sn-glycerol-3-phosphate and the corresponding alcohols.
      Title: Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (UgpQ) requires Mg2+, Co2+, or Mn2+ for its enzyme activity.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables glycerophosphocholine phosphodiesterase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables glycerophosphodiester phosphodiesterase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycerophosphoinositol glycerophosphodiesterase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycerol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    glycerophosphodiester phosphodiesterase UgpQ
    NP_417906.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3587370..3588113 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417906.1 glycerophosphodiester phosphodiesterase UgpQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417906.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AN05
      Conserved Domains (1) summary
      PRK09454
      Location:1 → 247
      ugpQ; cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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