U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ybfE ribbon-helix-helix domain-containing protein YbfE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945291, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ybfE
    Official Full Name
    ribbon-helix-helix domain-containing protein YbfE
    Primary source
    ECOCYC:EG11775
    Locus tag
    b0685
    See related
    ASAP:ABE-0002335
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0673
    Summary
    LexA regulon. [More information is available at EcoGene: EG11775]. Levels of ybfE mRNA are increased by exposure to the DNA damaging agent mitomycin C; the increase is dependent on LexA. [More information is available at EcoCyc: EG11775].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (711605..711898, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator Fur Neighboring gene RyhB-regulated fur leader peptide Neighboring gene flavodoxin 1 Neighboring gene esterase Neighboring gene negative modulator of initiation of replication

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The response of Escherichia coli to the alkylating agents chloroacetaldehyde and styrene oxide. Muenter MM, et al. Mutat Res Genet Toxicol Environ Mutagen, 2019 Apr. PMID 30857727, Free PMC Article
    2. NikR is a ribbon-helix-helix DNA-binding protein. Chivers PT, et al. Protein Sci, 1999 Nov. PMID 10595554, Free PMC Article
    3. Identification of additional genes belonging to the LexA regulon in Escherichia coli. Fernández De Henestrosa AR, et al. Mol Microbiol, 2000 Mar. PMID 10760155
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ribbon-helix-helix domain-containing protein YbfE

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      711605..711898 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415211.2 ribbon-helix-helix domain-containing protein YbfE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415211.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H2V5A4, A0A0H3EEL7, A0A0J2B729, A0A376TK31, A0A454A287
      Conserved Domains (1) summary
      PRK11675
      Location:1 → 90
      PRK11675; LexA regulated protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.