U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ybgI radiation resistance protein YbgI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945824, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ybgI
    Official Full Name
    radiation resistance protein YbgI
    Primary source
    ECOCYC:G6379
    Locus tag
    b0710
    See related
    ASAP:ABE-0002424
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0699
    Summary
    YbgI is a member of the widely conserved protein family UPF0135. [More information is available at EcoGene: EG13305]. YbgI is proposed to be a hydrolase-oxidase . [More information is available at EcoCyc: G6379].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (742827..743570)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1722 domain-containing protein YbgA Neighboring gene deoxyribodipyrimidine photolyase Neighboring gene dipeptide:H(+) symporter DtpD Neighboring gene 5-oxoprolinase component B Neighboring gene 5-oxoprolinase component C Neighboring gene 5-oxoprolinase component A

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons. Gifford CM, et al. Nucleic Acids Res, 2000 Feb 1. PMID 10637328, Free PMC Article
    2. Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation. Byrne RT, et al. J Bacteriol, 2014 Oct. PMID 25049088, Free PMC Article
    3. Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Kolker E, et al. Nucleic Acids Res, 2004. PMID 15121896, Free PMC Article
    4. Energetics-based protein profiling on a proteomic scale: identification of proteins resistant to proteolysis. Park C, et al. J Mol Biol, 2007 May 18. PMID 17400245, Free PMC Article
    5. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein hexamerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ionizing radiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell pole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    radiation resistance protein YbgI

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      742827..743570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415238.1 radiation resistance protein YbgI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415238.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7EMG0
      Conserved Domains (1) summary
      PRK10799
      Location:1 → 247
      PRK10799; type 2 GTP cyclohydrolase I
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.