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    ydcC H repeat-associated putative transposase YdcC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947435, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydcC
    Official Full Name
    H repeat-associated putative transposase YdcC
    Primary source
    ECOCYC:EG11526
    Locus tag
    b1460
    See related
    ASAP:ABE-0004872
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1454
    Summary
    Downregulated twofold by GSNO in defined medium (aerobic). [More information is available at EcoGene: EG11526].
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    Genomic context

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    Sequence:
    NC_000913.3 (1531816..1532952)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YdcD Neighboring gene protein YncO Neighboring gene pseudo Neighboring gene tautomerase PptA Neighboring gene flavin reductase-like protein YddH Neighboring gene arylamine N-acetyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement. Jackson AP, et al. BMC Genomics, 2009 Dec 7. PMID 19968874, Free PMC Article
    2. Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories. Zhao S, et al. J Bacteriol, 1993 May. PMID 8387990, Free PMC Article
    3. Transcriptional responses of Escherichia coli to S-nitrosoglutathione under defined chemostat conditions reveal major changes in methionine biosynthesis. Flatley J, et al. J Biol Chem, 2005 Mar 18. PMID 15647275
    4. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transposase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA transposition IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    H repeat-associated putative transposase YdcC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1531816..1532952
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415977.1 H repeat-associated putative transposase YdcC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415977.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WQR5
      Conserved Domains (2) summary
      COG5433
      Location:317 → 378
      YhhI; Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons]
      NF033564
      Location:29 → 344
      transpos_ISAs1; ISAs1 family transposase
    Nucleotide Protein
    Heading Accession and Version

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