U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    xseA exodeoxyribonuclease VII subunit XseA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946988, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    xseA
    Official Full Name
    exodeoxyribonuclease VII subunit XseA
    Primary source
    ECOCYC:EG11072
    Locus tag
    b2509
    See related
    ASAP:ABE-0008263
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2505; xse
    Summary
    XseA is the large subunit of Exonuclease VII . [More information is available at EcoCyc: EG11072].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2634232..2635602)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene GMP synthetase Neighboring gene inosine 5'-monophosphate dehydrogenase Neighboring gene zinc ribbon domain-containing protein YfgJ Neighboring gene 50S ribosomal subunit stability factor Neighboring gene outer membrane protein assembly factor BamB

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Escherichia coli mutants deficient in exonuclease VII. Chase JW, et al. J Bacteriol, 1977 Feb. PMID 320198, Free PMC Article
    2. A novel mutational hotspot in a natural quasipalindrome in Escherichia coli. Viswanathan M, et al. J Mol Biol, 2000 Sep 22. PMID 10986118
    3. Exonuclease VII of Escherichia coli. Mechanism of action. Chase JW, et al. J Biol Chem, 1974 Jul 25. PMID 4602030
    4. Exonuclease VII of Escherichia coli. Purification and properties. Chase JW, et al. J Biol Chem, 1974 Jul 25. PMID 4602029
    5. Deoxyribonucleic acid repair in Escherichia coli mutants deficient in the 5'----3' exonuclease activity of deoxyribonucleic acid polymerase I and exonuclease VII. Chase JW, et al. J Bacteriol, 1977 May. PMID 400786, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables exodeoxyribonuclease VII activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mismatch repair IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of exodeoxyribonuclease VII complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of exodeoxyribonuclease VII complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    exodeoxyribonuclease VII subunit XseA
    NP_417004.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2634232..2635602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417004.1 exodeoxyribonuclease VII subunit XseA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417004.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7ECW2
      Conserved Domains (1) summary
      PRK00286
      Location:5 → 443
      xseA; exodeoxyribonuclease VII large subunit; Reviewed
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.