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    ygcW putative deoxygluconate dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947232, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygcW
    Official Full Name
    putative deoxygluconate dehydrogenase
    Primary source
    ECOCYC:G7440
    Locus tag
    b2774
    See related
    ASAP:ABE-0009088
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2768
    Summary
    AFMB Structural Genomics target Number 21 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13130].
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    Genomic context

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    Sequence:
    NC_000913.3 (2899488..2900273, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative flavoprotein Neighboring gene putative transporter YgcS Neighboring gene putative FAD-containing dehydrogenase Neighboring gene putative transport protein YqcE Neighboring gene putative sugar kinase YgcE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative deoxygluconate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2899488..2900273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417254.4 putative deoxygluconate dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417254.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1PRJ3, A0A8S7FDV3
      Conserved Domains (1) summary
      cd05347
      Location:14 → 260
      Ga5DH-like_SDR_c; gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs
    Nucleotide Protein
    Heading Accession and Version

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