U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ygeI protein YgeI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947336, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ygeI
    Official Full Name
    protein YgeI
    Primary source
    ECOCYC:G7473
    Locus tag
    b2853
    See related
    ASAP:ABE-0009374
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2851
    Summary
    This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. [More information is available at EcoGene: EG13039]. ygeI is located within a remnant of an ETT2 (type III secretion system) pathogenicity island that is fully present in pathogenic strains such as Escherichia coli O157:H7 and at least partially present in most sequenced Escherichia coli and Shigella strains . [More information is available at EcoCyc: G7473].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2993638..2993856)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene TPR repeat-containing putative chaperone YgeG Neighboring gene putative transcriptional regulator YgeH Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. Ren CP, et al. J Bacteriol, 2004 Jun. PMID 15150243, Free PMC Article
    2. A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis. Ideses D, et al. J Bacteriol, 2005 Dec. PMID 16291689, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein YgeI

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2993638..2993856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417330.1 protein YgeI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417330.1

      Status: PROVISIONAL

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.