U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yqfA hemolysin-III family protein YqfA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947381, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yqfA
    Official Full Name
    hemolysin-III family protein YqfA
    Primary source
    ECOCYC:G7512
    Locus tag
    b2899
    See related
    ASAP:ABE-0009515
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2894
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3042489..3043148, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YgfX Neighboring gene FAD assembly factor Neighboring gene folate-binding protein Neighboring gene N(4)-acetylcytidine amidohydrolase Neighboring gene 6-phospho-beta-glucosidase A

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Silencing of NADPH-dependent oxidoreductase genes (yqhD and dkgA) in furfural-resistant ethanologenic Escherichia coli. Miller EN, et al. Appl Environ Microbiol, 2009 Jul. PMID 19429550, Free PMC Article
    2. Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. McCue L, et al. Nucleic Acids Res, 2001 Feb 1. PMID 11160901, Free PMC Article
    3. Bacterial Homologs of Progestin and AdipoQ Receptors (PAQRs) Affect Membrane Energetics Homeostasis but Not Fluidity. Melchionna MV, et al. J Bacteriol, 2022 Apr 19. PMID 35285724, Free PMC Article
    4. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
    5. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables pore-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of membrane potential IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    hemolysin-III family protein YqfA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3042489..3043148 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417375.1 hemolysin-III family protein YqfA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417375.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7EDP3
      Conserved Domains (1) summary
      PRK15087
      Location:1 → 219
      PRK15087; hemolysin; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.