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    yiaD PF13488 family lipoprotein YiaD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948075, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yiaD
    Official Full Name
    PF13488 family lipoprotein YiaD
    Primary source
    ECOCYC:EG12271
    Locus tag
    b3552
    See related
    ASAP:ABE-0011601
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3539
    Summary
    First 20 aa are a type II signal peptide. [More information is available at EcoGene: EG12271]. YiaD is an uncharacterized protein. [More information is available at EcoCyc: EG12271].
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    Genomic context

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    Sequence:
    NC_000913.3 (3716547..3717206)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-methyl-adenine DNA glycosylase I, constitutive Neighboring gene peptidyl-lysine N-acetyltransferase YiaC Neighboring gene biotin sulfoxide reductase Neighboring gene glyoxylate reductase Neighboring gene DUF3053 domain-containing protein YiaF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and nucleotide sequence of bisC, the structural gene for biotin sulfoxide reductase in Escherichia coli. Pierson DE, et al. J Bacteriol, 1990 Apr. PMID 2180922, Free PMC Article
    2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    3. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in bacterial-type flagellum-dependent cell motility IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of bacterial-type flagellum stator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PF13488 family lipoprotein YiaD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3716547..3717206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_026228.1 PF13488 family lipoprotein YiaD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_026228.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376M0S5
      Conserved Domains (1) summary
      PRK10510
      Location:1 → 219
      PRK10510; OmpA family lipoprotein
    Nucleotide Protein
    Heading Accession and Version

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