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    ybaB putative nucleoid-associated protein YbaB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945104, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybaB
    Official Full Name
    putative nucleoid-associated protein YbaB
    Primary source
    ECOCYC:EG11100
    Locus tag
    b0471
    See related
    ASAP:ABE-0001636
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0465
    Summary
    otherPDB (H. influenzae): [More information is available at EcoGene: EG11100]. The ybaB gene is regulated by sigmaE, suggesting involvement in the extracytoplasmic stress response . [More information is available at EcoCyc: EG11100].
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    Genomic context

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    Sequence:
    NC_000913.3 (494076..494405)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene adenine phosphoribosyltransferase Neighboring gene DNA polymerase III subunit gamma;DNA polymerase III subunit tau Neighboring gene recombination mediator protein RecR Neighboring gene chaperone protein HtpG Neighboring gene adenylate kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli Proteome Microarrays Identified the Substrates of ClpYQ Protease. Tsai CH, et al. Mol Cell Proteomics, 2017 Jan. PMID 27864322, Free PMC Article
    2. The recR locus of Escherichia coli K-12: molecular cloning, DNA sequencing and identification of the gene product. Mahdi AA, et al. Nucleic Acids Res, 1989 Sep 12. PMID 2674903, Free PMC Article
    3. Sequence and expression of the Escherichia coli recR locus. Yeung T, et al. J Bacteriol, 1990 Oct. PMID 1698765, Free PMC Article
    4. The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame. Flower AM, et al. Nucleic Acids Res, 1986 Oct 24. PMID 3534795, Free PMC Article
    5. Proteomics of Mycoplasma genitalium: identification and characterization of unannotated and atypical proteins in a small model genome. Balasubramanian S, et al. Nucleic Acids Res, 2000 Aug 15. PMID 10931922, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YbaB was demonstrated to be a DNA-binding protein
      Title: DNA-binding by Haemophilus influenzae and Escherichia coli YbaB, members of a widely-distributed bacterial protein family.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to radiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in bacterial nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative nucleoid-associated protein YbaB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      494076..494405
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415004.1 putative nucleoid-associated protein YbaB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415004.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A192CJC6, A0AA36P4X6, Q1RF64
      Conserved Domains (1) summary
      PRK00153
      Location:3 → 105
      PRK00153; YbaB/EbfC family nucleoid-associated protein
    Nucleotide Protein
    Heading Accession and Version

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