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    ybaT putative transporter YbaT [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945363, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybaT
    Official Full Name
    putative transporter YbaT
    Primary source
    ECOCYC:G6262
    Locus tag
    b0486
    See related
    ASAP:ABE-0001690
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0480
    Summary
    YbaT is suggested to be involved in selenate transport. [More information is available at EcoGene: EG13248]. YbaT is a putative amino acid/amine transporter of the APC superfamily. [More information is available at EcoCyc: G6262].
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    Genomic context

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    Sequence:
    NC_000913.3 (512576..513868)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene Cu(+) exporting P-type ATPase;soluble Cu(+) chaperone Neighboring gene glutaminase 1 Neighboring gene DNA-binding transcriptional dual regulator CueR Neighboring gene NfeD-like family protein YbbJ Neighboring gene PHB domain-containing protein QmcA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interplay between tolerance mechanisms to copper and acid stress in Escherichia coli. Djoko KY, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611214, Free PMC Article
    2. Comparative genomics of regulation of heavy metal resistance in Eubacteria. Permina EA, et al. BMC Microbiol, 2006 Jun 5. PMID 16753059, Free PMC Article
    3. A scalable, GFP-based pipeline for membrane protein overexpression screening and purification. Drew D, et al. Protein Sci, 2005 Aug. PMID 15987891, Free PMC Article
    4. Gene expression profiling of the pH response in Escherichia coli. Tucker DL, et al. J Bacteriol, 2002 Dec. PMID 12426343, Free PMC Article
    5. Genes of the GadX-GadW regulon in Escherichia coli. Tucker DL, et al. J Bacteriol, 2003 May. PMID 12730179, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to pH IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within stress response to copper ion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within stress response to copper ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transporter YbaT

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      512576..513868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415019.1 putative transporter YbaT [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415019.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FR64, A0A478LK53, A0A9P2I724
      Conserved Domains (1) summary
      COG0531
      Location:1 → 424
      PotE; Amino acid transporter [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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