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    ybiY putative pyruvate formate-lyase activating enzyme YbiY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945445, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybiY
    Official Full Name
    putative pyruvate formate-lyase activating enzyme YbiY
    Primary source
    ECOCYC:G6427
    Locus tag
    b0824
    See related
    ASAP:ABE-0002812
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0814; pflE
    Summary
    AFMB Structural Genomics target Number 85 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13470].
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    Genomic context

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    Sequence:
    NC_000913.3 (862612..863511, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene sugar phosphatase YbiV Neighboring gene putative pyruvate formate lyase Neighboring gene fructose-6-phosphate aldolase 1 Neighboring gene molybdopterin-synthase adenylyltransferase Neighboring gene molybdopterin molybdotransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article
    5. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Sofia HJ, et al. Nucleic Acids Res, 2001 Mar 1. PMID 11222759, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables [formate-C-acetyltransferase]-activating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative pyruvate formate-lyase activating enzyme YbiY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      862612..863511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415345.2 putative pyruvate formate-lyase activating enzyme YbiY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415345.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5YJM6
      Conserved Domains (1) summary
      TIGR02494
      Location:2 → 292
      PFLE_PFLC; glycyl-radical enzyme activating protein
    Nucleotide Protein
    Heading Accession and Version

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