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    yccS putative transporter YccS [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947001, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yccS
    Official Full Name
    putative transporter YccS
    Primary source
    ECOCYC:G6495
    Locus tag
    b0960
    See related
    ASAP:ABE-0003251
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0951
    Summary
    YccS is an inner membrane protein with nine predicted transmembrane domains. [More information is available at EcoCyc: G6495].
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    Genomic context

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    Sequence:
    NC_000913.3 (1021730..1023883, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene outer membrane protein A Neighboring gene cell division inhibitor SulA Neighboring gene transcriptional coactivator for CRP Neighboring gene PF03733 family inner membrane protein YccF Neighboring gene DNA helicase IV

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
    2. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
    3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative transporter YccS

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1021730..1023883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415480.2 putative transporter YccS [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415480.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0D6ZX77, A0A2A2XHF0, A0A8B3LUQ3, A0AA35AR35, A0AAN1AMT3, A0AAN1S389, A0AAV3HD60, A0AAV3I9P7
      Conserved Domains (1) summary
      TIGR01666
      Location:8 → 706
      YCCS; TIGR01666 family membrane protein
    Nucleotide Protein
    Heading Accession and Version

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