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    ycfT inner membrane protein YcfT [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945679, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycfT
    Official Full Name
    inner membrane protein YcfT
    Primary source
    ECOCYC:G6572
    Locus tag
    b1115
    See related
    ASAP:ABE-0003767
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1101
    Summary
    Membrane topology predictions using experimentally determined C terminus locations indicate that YcfT has 8 transmembrane helices and the C-terminus is located in the cytoplasm . ycfT is induced upon deletion of tqsA, which controls biofilm development by influencing the export of autoinducer 2 . [More information is available at EcoCyc: G6572].
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    Genomic context

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    Sequence:
    NC_000913.3 (1174092..1175165, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene L,D-transpeptidase LdtC Neighboring gene transcription-repair coupling factor Neighboring gene lipoprotein release complex - inner membrane subunit Neighboring gene lipoprotein release complex - ATP binding subunit Neighboring gene lipoprotein release complex - inner membrane subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
    2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    3. YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport. Herzberg M, et al. J Bacteriol, 2006 Jan. PMID 16385049, Free PMC Article
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in enterobacterial common antigen biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    inner membrane protein YcfT

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1174092..1175165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415633.1 inner membrane protein YcfT [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415633.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AJJ0
      Conserved Domains (1) summary
      COG4763
      Location:1 → 357
      YcfT; Uncharacterized membrane protein YcfT [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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