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    ydiJ putative FAD-linked oxidoreductase YdiJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946189, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydiJ
    Official Full Name
    putative FAD-linked oxidoreductase YdiJ
    Primary source
    ECOCYC:G6913
    Locus tag
    b1687
    See related
    ASAP:ABE-0005632
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1684
    Summary
    Overexpression causes abnormal biofilm architecture, increased crystal violet staining, and reduced motility. [More information is available at EcoGene: EG13969]. YdiJ has similarity to a nonessential protein of Pseudomonas putida . [More information is available at EcoCyc: G6913].
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    Genomic context

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    Sequence:
    NC_000913.3 (1765629..1768685, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein YdiH Neighboring gene 1,4-dihydroxy-2-naphthoyl-CoA hydrolase Neighboring gene putative transporter YdiK Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A bioluminescent derivative of Pseudomonas putida KT2440 for deliberate release into the environment. Ramos C, et al. FEMS Microbiol Ecol, 2000 Dec 1. PMID 11102686
    2. An integrative computational model for large-scale identification of metalloproteins in microbial genomes: a focus on iron-sulfur cluster proteins. Estellon J, et al. Metallomics, 2014 Oct. PMID 25117543
    3. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
    4. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables D-lactate dehydrogenase (cytochrome) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables D-lactate dehydrogenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables flavin adenine dinucleotide binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables flavin adenine dinucleotide binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in lactate catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative FAD-linked oxidoreductase YdiJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1765629..1768685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416202.1 putative FAD-linked oxidoreductase YdiJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416202.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9Q373
      Conserved Domains (2) summary
      COG0247
      Location:568 → 1018
      GlpC; Fe-S oxidoreductase [Energy production and conversion]
      COG0277
      Location:31 → 543
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version

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