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    ygeA amino acid racemase YgeA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947348, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ygeA
    Official Full Name
    amino acid racemase YgeA
    Primary source
    ECOCYC:EG11157
    Locus tag
    b2840
    See related
    ASAP:ABE-0009315
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2838
    Summary
    YgeA is predicted to be an amino acid racemase . [More information is available at EcoCyc: EG11157].
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    Genomic context

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    Sequence:
    NC_000913.3 (2979943..2980635, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator GalR Neighboring gene diaminopimelate decarboxylase Neighboring gene DNA-binding transcriptional dual regulator LysR Neighboring gene arabinose:H(+) symporter Neighboring gene putative 2-keto-3-deoxy-D-gluconate dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis. Vitreschak AG, et al. FEMS Microbiol Lett, 2004 May 15. PMID 15135544
    2. The cloning, DNA sequence, and overexpression of the gene araE coding for arabinose-proton symport in Escherichia coli K12. Maiden MC, et al. J Biol Chem, 1988 Jun 15. PMID 2836407
    3. Regulation of diaminopimelate decarboxylase synthesis in Escherichia coli. III. Nucleotide sequence and regulation of the lysR gene. Stragier P, et al. J Mol Biol, 1983 Aug 5. PMID 6350602
    4. Identification and characterization of novel broad-spectrum amino acid racemases from Escherichia coli and Bacillus subtilis. Miyamoto T, et al. Amino Acids, 2017 Nov. PMID 28894939
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables amino-acid racemase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables amino-acid racemase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid racemase YgeA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2979943..2980635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417317.1 amino acid racemase YgeA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417317.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A765T533
      Conserved Domains (1) summary
      PRK10200
      Location:1 → 230
      PRK10200; putative racemase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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