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    rpiA ribose-5-phosphate isomerase A [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947407, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rpiA
    Official Full Name
    ribose-5-phosphate isomerase A
    Primary source
    ECOCYC:EG11443
    Locus tag
    b2914
    See related
    ASAP:ABE-0009567
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2910; ygfC
    Summary
    RpiA has similarity to an Edwardsiella ictaluri protein that provokes an immune response in catfish . [More information is available at EcoCyc: EG11443].
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    Genomic context

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    Sequence:
    NC_000913.3 (3058666..3059325, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene toxic peptide IbsC Neighboring gene phosphoglycerate dehydrogenase Neighboring gene pseudo Neighboring gene DNA-binding transcriptional dual regulator ArgP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The tdh and serA operons of Escherichia coli: mutational analysis of the regulatory elements of leucine-responsive genes. Rex JH, et al. J Bacteriol, 1991 Oct. PMID 1917830, Free PMC Article
    2. Effects of the presence of ColE1 plasmid DNA in Escherichia coli on the host cell metabolism. Wang Z, et al. Microb Cell Fact, 2006 Nov 17. PMID 17112383, Free PMC Article
    3. Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle. Zhang Rg, et al. Structure, 2003 Jan. PMID 12517338, Free PMC Article
    4. Two ribose-5-phosphate isomerases from Escherichia coli K12: partial characterisation of the enzymes and consideration of their possible physiological roles. Essenberg MK, et al. Eur J Biochem, 1975 Jul 1. PMID 1104357
    5. Escherichia coli rpiA gene encoding ribose phosphate isomerase A. Hove-Jensen B, et al. J Bacteriol, 1993 Sep. PMID 8366047, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: '98 Escherichia coli SWISS-2DPAGE database update.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ribose-5-phosphate isomerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ribose-5-phosphate isomerase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ribose-5-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribose-5-phosphate isomerase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-ribose metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within D-ribose metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pentose-phosphate shunt, non-oxidative branch IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in pentose-phosphate shunt, non-oxidative branch IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in small molecule metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribose-5-phosphate isomerase A
    NP_417389.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3058666..3059325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417389.1 ribose-5-phosphate isomerase A [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417389.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7L7EJP5
      Conserved Domains (1) summary
      PRK00702
      Location:1 → 217
      PRK00702; ribose-5-phosphate isomerase RpiA
    Nucleotide Protein
    Heading Accession and Version

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