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    ubiU ubiquinone biosynthesis protein UbiU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 949115, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ubiU
    Official Full Name
    ubiquinone biosynthesis protein UbiU
    Primary source
    ECOCYC:G7652
    Locus tag
    b3158
    See related
    ASAP:ABE-0010380
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3146; yhbU
    Summary
    AFMB Structural Genomics target Number 32 (http://afmb.cnrs-mrs.fr/article171.html). ydcP, yegQ, yhbU, and yhbV are paralogs. [More information is available at EcoGene: EG12790].
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    Genomic context

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    Sequence:
    NC_000913.3 (3301485..3302480)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA damage response nuclease YhbQ Neighboring gene putative N-acetyltransferase YhbS Neighboring gene anaerobic ubiquinone biosynthesis accessory factor UbiT Neighboring gene ubiquinone biosynthesis protein UbiV Neighboring gene putative luciferase-like monooxygenase YhbW

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ubiquinone Biosynthesis over the Entire O(2) Range: Characterization of a Conserved O(2)-Independent Pathway. Pelosi L, et al. mBio, 2019 Jul 9. PMID 31289180, Free PMC Article
    2. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
    3. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquinone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ubiquinone biosynthetic process from chorismate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquinone biosynthesis protein UbiU

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3301485..3302480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417627.1 ubiquinone biosynthesis protein UbiU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417627.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7ECG7
      Conserved Domains (1) summary
      COG0826
      Location:1 → 331
      PrtC; Collagenase-like protease, PrtC family [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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