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    yhbY ribosome assembly factor YhbY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947688, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhbY
    Official Full Name
    ribosome assembly factor YhbY
    Primary source
    ECOCYC:EG12794
    Locus tag
    b3180
    See related
    ASAP:ABE-0010452
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3169
    Summary
    Similar to IF3 C-terminal RNA binding fold. [More information is available at EcoGene: EG12794]. YhbY was found to associate with the 50S subunit of the ribosome . [More information is available at EcoCyc: EG12794].
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    Genomic context

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    Sequence:
    NC_000913.3 (3327790..3328083)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FtsH Neighboring gene 23S rRNA 2'-O-ribose U2552 methyltransferase Neighboring gene transcription elongation factor GreA Neighboring gene peptidoglycan DD-endopeptidase DacB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The nucleotide sequence of greA, a suppressor gene that restores growth of an Escherichia coli RNA polymerase mutant at high temperature. Sparkowski J, et al. Nucleic Acids Res, 1990 Nov 11. PMID 2243801, Free PMC Article
    2. Gene targeting using randomly inserted group II introns (targetrons) recovered from an Escherichia coli gene disruption library. Yao J, et al. Nucleic Acids Res, 2005. PMID 15947133, Free PMC Article
    3. Structure of HI1333 (YhbY), a putative RNA-binding protein from Haemophilus influenzae. Willis MA, et al. Proteins, 2002 Nov 15. PMID 12360533
    4. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article
    5. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables preribosome binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA 5'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ribosomal large subunit assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ribosomal small subunit assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosome assembly factor YhbY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3327790..3328083
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417647.1 ribosome assembly factor YhbY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417647.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1NWH1, A0A8S7X8D4
      Conserved Domains (1) summary
      PRK10343
      Location:1 → 97
      PRK10343; ribosome assembly RNA-binding protein YhbY
    Nucleotide Protein
    Heading Accession and Version

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