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    yhcN DUF1471 domain-containing stress-induced protein YhcN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947835, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yhcN
    Official Full Name
    DUF1471 domain-containing stress-induced protein YhcN
    Primary source
    ECOCYC:G7683
    Locus tag
    b3238
    See related
    ASAP:ABE-0010623
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3227
    Summary
    22 aa signal peptide cleavage and periplasmic localization of YhcN have been experimentally verified, Mitchell, R., Del Campo, M., Hus, N. and Rudd, K.E., unpublished results. [More information is available at EcoGene: EG12820].
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    Genomic context

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    Sequence:
    NC_000913.3 (3385538..3385801)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase Neighboring gene DNA-binding transcriptional dual regulator ArgR Neighboring gene putative barnase inhibitor Neighboring gene aromatic carboxylic acid efflux pump subunit AaeB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EcoGene: a genome sequence database for Escherichia coli K-12. Rudd KE. Nucleic Acids Res, 2000 Jan 1. PMID 10592181, Free PMC Article
    2. Rapid acid treatment of Escherichia coli: transcriptomic response and recovery. Kannan G, et al. BMC Microbiol, 2008 Feb 26. PMID 18302792, Free PMC Article
    3. Low molecular weight proteins: a challenge for post-genomic research. Rudd KE, et al. Electrophoresis, 1998 Apr. PMID 9588799
    4. Escherichia coli gene expression responsive to levels of the response regulator EvgA. Masuda N, et al. J Bacteriol, 2002 Nov. PMID 12399493, Free PMC Article
    5. Identification of stress-related proteins in Escherichia coli using the pollutant cis-dichloroethylene. Lee J, et al. J Appl Microbiol, 2010 Jun. PMID 19919618

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to acidic pH IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to hydrogen peroxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation on inanimate substrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF1471 domain-containing stress-induced protein YhcN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3385538..3385801
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417705.2 DUF1471 domain-containing stress-induced protein YhcN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417705.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H2Z343, A0A0H3EM47, A0A0H3JKM0, A0A192CC68, A0A1X3I3B3, A0A1X3IXR2, A0A1X3JCL2, A0A829L5B4, A0AA36L0S4, A0AAN4SWS9, C3SRU2, F4T3W8, Q1R6A1
      Conserved Domains (1) summary
      NF033776
      Location:1 → 87
      stress_YhcN; peroxide/acid stress response protein YhcN
    Nucleotide Protein
    Heading Accession and Version

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