U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yhgF putative RNA-binding protein YhgF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947911, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yhgF
    Official Full Name
    putative RNA-binding protein YhgF
    Primary source
    ECOCYC:G7746
    Locus tag
    b3407
    See related
    ASAP:ABE-0011120
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3394
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3537385..3539706)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene sensor histidine kinase EnvZ Neighboring gene DNA-binding transcriptional dual regulator OmpR Neighboring gene transcription elongation factor GreB Neighboring gene ferrous iron transport protein A Neighboring gene Fe(2(+)) transporter FeoB Neighboring gene ferrous iron transport protein FeoC

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins. Stenum TS, et al. Nucleic Acids Res, 2023 May 22. PMID 36987847, Free PMC Article
    2. Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation. Byrne RT, et al. J Bacteriol, 2014 Oct. PMID 25049088, Free PMC Article
    3. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    4. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
    5. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins.
      Title: RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA binding EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables tRNA binding EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleobase-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to ionizing radiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative RNA-binding protein YhgF

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3537385..3539706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417866.4 putative RNA-binding protein YhgF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417866.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2H4TU22, A0AAN5FU54
      Conserved Domains (1) summary
      COG2183
      Location:1 → 759
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.