U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    dinF DNA damage-inducible protein F [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948554, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    dinF
    Official Full Name
    DNA damage-inducible protein F
    Primary source
    ECOCYC:EG11491
    Locus tag
    b4044
    See related
    ASAP:ABE-0013243
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4036
    Summary
    LexA regulon. [More information is available at EcoGene: EG11491]. The DinF protein is an uncharacterised member of the MATE family of multidrug efflux transporters . [More information is available at EcoCyc: EG11491].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (4257742..4259121)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase Neighboring gene DNA-binding transcriptional repressor LexA Neighboring gene putative stress response protein YjbJ Neighboring gene DNA-binding transcriptional repressor Zur

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Escherichia coli SOS gene dinF protects against oxidative stress and bile salts. Rodríguez-Beltrán J, et al. PLoS One, 2012. PMID 22523558, Free PMC Article
    2. Isolation and characterization of Tn5 insertion mutations in the lexA gene of Escherichia coli. Krueger JH, et al. J Bacteriol, 1983 Mar. PMID 6298183, Free PMC Article
    3. Organization of the lexA gene of Escherichia coli and nucleotide sequence of the regulatory region. Miki T, et al. Nucleic Acids Res, 1981 Feb 11. PMID 6261224, Free PMC Article
    4. DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. Kenyon CJ, et al. Proc Natl Acad Sci U S A, 1980 May. PMID 6771759, Free PMC Article
    5. NorM, a putative multidrug efflux protein, of Vibrio parahaemolyticus and its homolog in Escherichia coli. Morita Y, et al. Antimicrob Agents Chemother, 1998 Jul. PMID 9661020, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xenobiotic transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in xenobiotic transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA damage-inducible protein F

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4257742..4259121
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418468.3 DNA damage-inducible protein F [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418468.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2FYJ8, A0A8S7R309
      Conserved Domains (1) summary
      PRK10367
      Location:19 → 459
      PRK10367; DNA-damage-inducible SOS response protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.