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    yajD HNH nuclease family protein YajD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945051, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yajD
    Official Full Name
    HNH nuclease family protein YajD
    Primary source
    ECOCYC:EG11097
    Locus tag
    b0410
    See related
    ASAP:ABE-0001422
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0404
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    Genomic context

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    Sequence:
    NC_000913.3 (430605..430952)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene Sec translocon accessory complex subunit SecD Neighboring gene Sec translocon accessory complex subunit SecF Neighboring gene nucleoside-specific channel-forming protein Tsx Neighboring gene putative lipoprotein YajI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The secD locus of E.coli codes for two membrane proteins required for protein export. Gardel C, et al. EMBO J, 1990 Oct. PMID 2170107, Free PMC Article
    2. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HNH nuclease family protein YajD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      430605..430952
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414944.1 HNH nuclease family protein YajD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414944.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376U358
      Conserved Domains (1) summary
      PRK11295
      Location:1 → 113
      PRK11295; HNH nuclease family protein
    Nucleotide Protein
    Heading Accession and Version

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