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    ninE NinE family prophage protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945151, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ninE
    Official Full Name
    NinE family prophage protein
    Primary source
    ECOCYC:G6304
    Locus tag
    b0548
    See related
    ASAP:ABE-0001876
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0539
    Summary
    NinE has 39% identity to gene products from the nin regions of bacteriophages and P22, though it lacks their half-zinc finger domain . [More information is available at EcoCyc: G6304].
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    Genomic context

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    Sequence:
    NC_000913.3 (572921..573091)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator Neighboring gene uncharacterized protein YlcH Neighboring gene DNA base-flipping protein Neighboring gene putative nuclease YbcO Neighboring gene crossover junction endodeoxyribonuclease RusA Neighboring gene uncharacterized protein YlcG Neighboring gene prophage antitermination protein Q homolog QuuD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82. Mahdi AA, et al. J Mol Biol, 1996 Apr 5. PMID 8648624
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NinE family prophage protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      572921..573091
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415080.1 NinE family prophage protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415080.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S0FVS9
      Conserved Domains (1) summary
      PRK09689
      Location:1 → 56
      PRK09689; prophage protein NinE; Provisional
    Nucleotide Protein
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