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    ybjS putative epimerase YbjS [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945495, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybjS
    Official Full Name
    putative epimerase YbjS
    Primary source
    ECOCYC:G6453
    Locus tag
    b0868
    See related
    ASAP:ABE-0002949
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0859
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    Genomic context

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    Sequence:
    NC_000913.3 (905740..906753, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF3828 domain-containing lipoprotein YbjP Neighboring gene putative heavy metal binding protein YbjQ Neighboring gene N-acetylmuramoyl-L-alanine amidase D Neighboring gene putative NAD(P)-binding protein YbjT Neighboring gene low-specificity L-threonine aldolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ampicillin/penicillin-binding protein interactions as a model drug-target system to optimize affinity pull-down and mass spectrometric strategies for target and pathway identification. von Rechenberg M, et al. Proteomics, 2005 May. PMID 15761956
    2. Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification. Liu F, et al. Nat Commun, 2017 May 19. PMID 28524877, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative epimerase YbjS

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      905740..906753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415389.2 putative epimerase YbjS [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415389.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3PQ48, A0A140NAU1, A0A1X3J4C7, A0A1X3JJQ0, A0A7I6H5H4, A0A8E0FTI4, A0A979GDZ0, A0AAN3MET5, A0AAN4ABV7, A7ZJT7, C3TGV2, E8PZ34, J7QDD7, W1EWJ0
      Conserved Domains (1) summary
      COG0451
      Location:1 → 335
      WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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