U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yccJ PF13993 family protein YccJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948930, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yccJ
    Official Full Name
    PF13993 family protein YccJ
    Primary source
    ECOCYC:EG12703
    Locus tag
    b1003
    See related
    ASAP:ABE-0003390
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0994
    Summary
    The initiating methionine is cleaved . [More information is available at EcoCyc: EG12703].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1066864..1067091, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YccE Neighboring gene glucose-1-phosphatase Neighboring gene NAD(P)H:quinone oxidoreductase Neighboring gene stress-induced bacterial acidophilic repeat motifs-containing protein YmdF

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Nucleotide sequence and transcriptional analysis of the Escherichia coli agp gene encoding periplasmic acid glucose-1-phosphatase. Pradel E, et al. J Bacteriol, 1990 Feb. PMID 2153660, Free PMC Article
    2. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    3. Small genes/gene-products in Escherichia coli K-12. Wasinger VC, et al. FEMS Microbiol Lett, 1998 Dec 15. PMID 9868784
    4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Small genes/gene-products in Escherichia coli K-12.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PF13993 family protein YccJ

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1066864..1067091 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415523.1 PF13993 family protein YccJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415523.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1IX23
      Conserved Domains (1) summary
      PRK10174
      Location:1 → 75
      PRK10174; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.