U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ydcZ putative inner membrane protein YdcZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946008, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ydcZ
    Official Full Name
    putative inner membrane protein YdcZ
    Primary source
    ECOCYC:G6758
    Locus tag
    b1447
    See related
    ASAP:ABE-0004823
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1441
    Summary
    YdcZ is an inner membrane protein with five predicted transmembrane domains. [More information is available at EcoCyc: G6758].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1517882..1518331, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene orphan toxin OrtT Neighboring gene DUF2526 domain-containing protein YdcY Neighboring gene L-amino acid N-acyltransferase Neighboring gene NADPH-dependent curcumin/dihydrocurcumin reductase Neighboring gene DNA-binding transcriptional dual regulator McbR

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli. Jindal S, et al. BMC Microbiol, 2019 Aug 22. PMID 31438868, Free PMC Article
    2. Evolution of antiparallel two-domain membrane proteins: tracing multiple gene duplication events in the DUF606 family. Lolkema JS, et al. J Mol Biol, 2008 May 2. PMID 18384811
    3. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    4. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in inorganic cation import across plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative inner membrane protein YdcZ

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1517882..1518331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415964.1 putative inner membrane protein YdcZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415964.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377CV25
      Conserved Domains (1) summary
      COG3238
      Location:1 → 149
      ydcZ; Uncharacterized membrane protein YdcZ, DUF606 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.