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    bdm biofilm-dependent modulation protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946041, updated on 3-Dec-2024

    Summary

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    Official Symbol
    bdm
    Official Full Name
    biofilm-dependent modulation protein
    Primary source
    ECOCYC:G6776
    Locus tag
    b1481
    See related
    ASAP:ABE-0004938
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1475; yddX
    Summary
    The yddX gene is renamed bdm and the site of the MudX insertion is between the T and the G of the re-annotated ATG start codon, personal communication, Philippe Lejeune, INSA, France, Oct. [More information is available at EcoGene: EG14301]. bdm is a member of the Rcs regulon . [More information is available at EcoCyc: G6776].
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    Genomic context

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    Sequence:
    NC_000913.3 (1556065..1556280, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase (oxaloacetate-decarboxylating) Neighboring gene ribosome-associated protein Sra Neighboring gene osmotically inducible peroxiredoxin OsmC Neighboring gene putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF Neighboring gene putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional role of bdm during flagella biogenesis in Escherichia coli. Kim JS, et al. Curr Microbiol, 2015 Mar. PMID 25398323
    2. Bdm-Mediated Regulation of Flagellar Biogenesis in Escherichia coli and Salmonella enterica Serovar Typhimurium. Lee J, et al. Curr Microbiol, 2017 Sep. PMID 28603807
    3. Escherichia coli ribonuclease III activity is downregulated by osmotic stress: consequences for the degradation of bdm mRNA in biofilm formation. Sim SH, et al. Mol Microbiol, 2010 Jan. PMID 19943899
    4. Osmotic regulation of the Escherichia coli bdm (biofilm-dependent modulation) gene by the RcsCDB His-Asp phosphorelay. Francez-Charlot A, et al. J Bacteriol, 2005 Jun. PMID 15901715, Free PMC Article
    5. Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays. Weber A, et al. J Bacteriol, 2002 Oct. PMID 12218039, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of bacterial-type flagellum assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    biofilm-dependent modulation protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1556065..1556280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415998.4 biofilm-dependent modulation protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415998.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1MTX2
      Conserved Domains (1) summary
      PRK11436
      Location:1 → 71
      PRK11436; biofilm-dependent modulation protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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