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    yphD putative ABC transporter membrane subunit YphD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 949063, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yphD
    Official Full Name
    putative ABC transporter membrane subunit YphD
    Primary source
    ECOCYC:G7340
    Locus tag
    b2546
    See related
    ASAP:ABE-0008373
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2543
    Summary
    Predicted yphFEDCB operon. [More information is available at EcoGene: EG13465]. YphD is a membrane component of a predicted ATP-dependent sugar transporter. [More information is available at EcoCyc: G7340].
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    Genomic context

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    Sequence:
    NC_000913.3 (2675827..2676825, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative aldose 1-epimerase YphB Neighboring gene putative zinc-binding dehydrogenase YphC Neighboring gene putative ABC transporter ATP-binding protein YphE Neighboring gene putative ABC transporter periplasmic binding protein YphF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    2. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    3. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex IC
    Inferred by Curator
    more info
    		 PubMed 
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative ABC transporter membrane subunit YphD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2675827..2676825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417041.1 putative ABC transporter membrane subunit YphD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417041.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3R0MRX1
      Conserved Domains (1) summary
      COG1172
      Location:22 → 330
      AraH; Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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