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    agaA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947646, updated on 3-Dec-2024

    Summary

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    Official Symbol
    agaA
    Primary source
    ECOCYC:EG12766
    Locus tag
    b3135
    See related
    ASAP:ABE-0010302
    Gene type
    pseudo
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3123; yraA
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    Genomic context

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    Sequence:
    NC_000913.3 (3281122..3281625)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene N-acetyl-D-galactosamine specific PTS enzyme IIB component Neighboring gene pseudo Neighboring gene putative galactosamine-6-phosphate deaminase/isomerase Neighboring gene tagatose-1,6-bisphosphate aldolase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic analysis of the roles of agaA, agaI, and agaS genes in the N-acetyl-D-galactosamine and D-galactosamine catabolic pathways in Escherichia coli strains O157:H7 and C. Hu Z, et al. BMC Microbiol, 2013 May 1. PMID 23634833, Free PMC Article
    2. A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Homma K, et al. Gene, 2002 Jul 10. PMID 12234664
    3. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
    4. Novel phosphotransferase genes revealed by bacterial genome sequencing: a gene cluster encoding a putative N-acetylgalactosamine metabolic pathway in Escherichia coli. Reizer J, et al. Microbiology (Reading), 1996 Feb. PMID 8932697
    5. Pathways for the utilization of N-acetyl-galactosamine and galactosamine in Escherichia coli. Brinkkötter A, et al. Mol Microbiol, 2000 Jul. PMID 10931310

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-acetyl-D-galactosamine utilization was not affected in DeltaagaA mutants because nagA was expressed and substituted for agaA.
      Title: Genetic analysis of the roles of agaA, agaI, and agaS genes in the N-acetyl-D-galactosamine and D-galactosamine catabolic pathways in Escherichia coli strains O157:H7 and C.
    Submit: New GeneRIF Correction

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