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    ybcF putative carbamate kinase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944972, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybcF
    Official Full Name
    putative carbamate kinase
    Primary source
    ECOCYC:EG12384
    Locus tag
    b0521
    See related
    ASAP:ABE-0001791
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    arcC; ECK0514
    Summary
    yqeA, yahI and ybcF are paralogs. [More information is available at EcoGene: EG12384].
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    Genomic context

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    Sequence:
    NC_000913.3 (550439..551332)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative oxamate carbamoyltransferase FdrA Neighboring gene DUF1116 domain-containing protein YlbE Neighboring gene DUF2877 domain-containing protein YlbF Neighboring gene 5-(carboxyamino)imidazole ribonucleotide synthase Neighboring gene N(5)-carboxyaminoimidazole ribonucleotide mutase Neighboring gene UDP-2,3-diacylglucosamine diphosphatase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ybcF Gene of Escherichia coli Encodes a Local Orphan Enzyme, Catabolic Carbamate Kinase. Kim NY, et al. J Microbiol Biotechnol, 2022 Dec 28. PMID 36384810, Free PMC Article
    2. Nucleotide sequence analysis of the purEK operon encoding 5'-phosphoribosyl-5-aminoimidazole carboxylase of Escherichia coli K-12. Tiedeman AA, et al. J Bacteriol, 1989 Jan. PMID 2464576, Free PMC Article
    3. Large scale bacterial gene discovery by similarity search. Robison K, et al. Nat Genet, 1994 Jun. PMID 7920643
    4. New genes in old sequence: a strategy for finding genes in the bacterial genome. Borodovsky M, et al. Trends Biochem Sci, 1994 Aug. PMID 7940673
    5. Identification and sequence analysis of Escherichia coli purE and purK genes encoding 5'-phosphoribosyl-5-amino-4-imidazole carboxylase for de novo purine biosynthesis. Watanabe W, et al. J Bacteriol, 1989 Jan. PMID 2644189, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The ybcF Gene of Escherichia coli Encodes a Local Orphan Enzyme, Catabolic Carbamate Kinase.
      Title: The ybcF Gene of Escherichia coli Encodes a Local Orphan Enzyme, Catabolic Carbamate Kinase.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative carbamate kinase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      550439..551332
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415054.1 putative carbamate kinase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415054.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1MKR2, A0A8H9SMV9, A0A8T5YFL9
      Conserved Domains (1) summary
      PRK09411
      Location:1 → 297
      PRK09411; carbamate kinase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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