U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ybhC outer membrane lipoprotein YbhC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945381, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ybhC
    Official Full Name
    outer membrane lipoprotein YbhC
    Primary source
    ECOCYC:EG12875
    Locus tag
    b0772
    See related
    ASAP:ABE-0002629
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0761
    Summary
    First 21 aa are a type II signal peptide. [More information is available at EcoGene: EG12875]. YbhC is an outer membrane lipoprotein . [More information is available at EcoCyc: EG12875].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (805998..807281, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative tricarboxylate transporter Neighboring gene putative hydratase YbhJ Neighboring gene putative kinase inhibitor Neighboring gene adenosylmethionine-8-amino-7-oxononanoate aminotransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The crystal structure of the outer membrane lipoprotein YbhC from Escherichia coli sheds new light on the phylogeny of carbohydrate esterase family 8. Eklöf JM, et al. Proteins, 2009 Sep. PMID 19452549
    2. Viral integration and excision: structure of the lambda att sites. Landy A, et al. Science, 1977 Sep 16. PMID 331474, Free PMC Article
    3. Proteomic screening and identification of differentially distributed membrane proteins in Escherichia coli. Lai EM, et al. Mol Microbiol, 2004 May. PMID 15130122
    4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    5. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The tertiary structure of a soluble, truncated form of YbhC lacking the membrane anchor was determined to 1.7 A resolution by x-ray crystallography.
      Title: The crystal structure of the outer membrane lipoprotein YbhC from Escherichia coli sheds new light on the phylogeny of carbohydrate esterase family 8.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables carboxylic ester hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cell outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    outer membrane lipoprotein YbhC

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      805998..807281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415293.1 outer membrane lipoprotein YbhC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415293.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7QYK9
      Conserved Domains (1) summary
      PRK10531
      Location:1 → 420
      PRK10531; putative acyl-CoA thioester hydrolase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.