U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ycdZ inner membrane protein YcdZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945617, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ycdZ
    Official Full Name
    inner membrane protein YcdZ
    Primary source
    ECOCYC:G6542
    Locus tag
    b1036
    See related
    ASAP:ABE-0003514
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1022; nupT
    Summary
    YcdZ is an inner membrane protein with five predicted transmembrane domains. [More information is available at EcoCyc: G6542].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1100296..1100787)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene zinc-binding phosphatase YcdX Neighboring gene chaperone protein YcdY Neighboring gene curli secretion channel Neighboring gene curli assembly component CsgF

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    2. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    3. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
    4. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    inner membrane protein YcdZ

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1100296..1100787
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415554.4 inner membrane protein YcdZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415554.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A140NDI7, A0A376P3N7, B1LIX8, W8SPF6
      Conserved Domains (1) summary
      pfam06496
      Location:10 → 142
      DUF1097; Protein of unknown function (DUF1097)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.