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    yceD DUF177 domain-containing protein YceD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945650, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yceD
    Official Full Name
    DUF177 domain-containing protein YceD
    Primary source
    ECOCYC:EG11119
    Locus tag
    b1088
    See related
    ASAP:ABE-0003684
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1074
    Summary
    G30K is a 30 kDa protein without known function . [More information is available at EcoCyc: EG11119].
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    Genomic context

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    Sequence:
    NC_000913.3 (1146794..1147315)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 23S rRNA pseudouridine(955/2504/2580) synthase Neighboring gene m(7)GTP pyrophosphatase Neighboring gene ncRNA Neighboring gene 50S ribosomal subunit protein L32 Neighboring gene putative phosphate acyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and analysis of an Escherichia coli operon containing the rpmF gene for ribosomal protein L32 and the gene for a 30-kilodalton protein. Tanaka Y, et al. J Bacteriol, 1989 Oct. PMID 2477362, Free PMC Article
    2. Physical locations of genes in the rne (ams)-rpmF-plsX-fab region of the Escherichia coli K-12 chromosome. Oh W, et al. J Bacteriol, 1992 Dec. PMID 1447160, Free PMC Article
    3. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
    4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF177 domain-containing protein YceD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1146794..1147315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415606.1 DUF177 domain-containing protein YceD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415606.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AJK5, A0A7A6LZH5
      Conserved Domains (1) summary
      PRK11193
      Location:1 → 172
      PRK11193; 23S rRNA accumulation protein YceD
    Nucleotide Protein
    Heading Accession and Version

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