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    racR DNA-binding transcriptional repressor RacR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945899, updated on 3-Dec-2024

    Summary

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    Official Symbol
    racR
    Official Full Name
    DNA-binding transcriptional repressor RacR
    Primary source
    ECOCYC:G6680
    Locus tag
    b1356
    See related
    ASAP:ABE-0004548
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1354; rarC; ydaR
    Summary
    racR encodes a function repressor of the Rac prophage, personal communications, A.J. [More information is available at EcoGene: EG13360].
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    Genomic context

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    Sequence:
    NC_000913.3 (1419765..1420241, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phage superinfection exclusion protein Neighboring gene DUF1391 domain-containing protein YdaF Neighboring gene uncharacterized protein YdaG Neighboring gene toxin YdaS Neighboring gene protein YdaT

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic rac Prophage of Escherichia coli K-12. Krishnamurthi R, et al. mSphere, 2017 Nov-Dec. PMID 29205228, Free PMC Article
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Baba T, et al. Mol Syst Biol, 2006. PMID 16738554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription repressor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription initiation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding transcriptional repressor RacR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1419765..1420241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415874.1 DNA-binding transcriptional repressor RacR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415874.1

      Status: PROVISIONAL

    Nucleotide Protein
    Heading Accession and Version

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