U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ydjA putative oxidoreductase YdjA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945964, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ydjA
    Official Full Name
    putative oxidoreductase YdjA
    Primary source
    ECOCYC:EG11134
    Locus tag
    b1765
    See related
    ASAP:ABE-0005875
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1763
    Summary
    Binds TrxA (Kumar, 2004). nfsA, nfsB, rutE, and ydjA are paralogs. [More information is available at EcoGene: EG11134]. Crystal structures of YdjA alone and with the FMN cofactor have been solved. [More information is available at EcoCyc: EG11134].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1848125..1848676, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase III Neighboring gene selenide, water dikinase Neighboring gene protease IV, a signal peptide peptidase Neighboring gene L-asparaginase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Crystal structure of a minimal nitroreductase, ydjA, from Escherichia coli K12 with and without FMN cofactor. Choi JW, et al. J Mol Biol, 2008 Mar 14. PMID 18241886
    2. Crystallization and preliminary X-ray diffraction analysis of ydjA, a minimal nitroreductase from Escherichia coli K12. Choi JW, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2007 Dec 1. PMID 18084095, Free PMC Article
    3. Discovery and evaluation of Escherichia coli nitroreductases that activate the anti-cancer prodrug CB1954. Prosser GA, et al. Biochem Pharmacol, 2010 Mar 1. PMID 19852945
    4. Expression and operon structure of the sel genes of Escherichia coli and identification of a third selenium-containing formate dehydrogenase isoenzyme. Sawers G, et al. J Bacteriol, 1991 Aug. PMID 1650339, Free PMC Article
    5. Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays. Winterberg KM, et al. Appl Environ Microbiol, 2005 Jan. PMID 15640221, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables FMN binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative oxidoreductase YdjA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1848125..1848676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416279.1 putative oxidoreductase YdjA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416279.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6C9Q8X9
      Conserved Domains (1) summary
      PRK10828
      Location:1 → 183
      PRK10828; putative oxidoreductase; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.