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    nimR DNA-binding transcriptional repressor NimR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946590, updated on 3-Dec-2024

    Summary

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    Official Symbol
    nimR
    Official Full Name
    DNA-binding transcriptional repressor NimR
    Primary source
    ECOCYC:G6976
    Locus tag
    b1790
    See related
    ASAP:ABE-0005956
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1788; yeaM
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    Genomic context

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    Sequence:
    NC_000913.3 (1874755..1875576, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene mischarged aminoacyl-tRNA deacylase Neighboring gene protein YoaI Neighboring gene DUF441 domain-containing inner membrane protein YeaL Neighboring gene 2-nitroimidazole exporter Neighboring gene DUF488 domain-containing protein YeaO

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Role of transcription factor NimR (YeaM) in sensitivity control of Escherichia coli to 2-nitroimidazole. Ogasawara H, et al. FEMS Microbiol Lett, 2015 Jan. PMID 25790494
    2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Several lines of in vitro and in vivo evidence indicate that YeaM regulates transcription of both the yeaM gene itself and the yeaNO operon.
      Title: Role of transcription factor NimR (YeaM) in sensitivity control of Escherichia coli to 2-nitroimidazole.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional repressor NimR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1874755..1875576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416304.1 DNA-binding transcriptional repressor NimR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416304.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0J1X4Z1
      Conserved Domains (2) summary
      COG2207
      Location:155 → 259
      AraC; AraC-type DNA-binding domain and AraC-containing proteins [Transcription]
      cd06124
      Location:32 → 113
      cupin_NimR-like_N; AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain
    Nucleotide Protein
    Heading Accession and Version

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