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    yfcD putative Nudix hydrolase YfcD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946783, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yfcD
    Official Full Name
    putative Nudix hydrolase YfcD
    Primary source
    ECOCYC:G7191
    Locus tag
    b2299
    See related
    ASAP:ABE-0007587
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2293
    Summary
    Predicted Nudix hydrolase. [More information is available at EcoGene: EG14107].
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    Genomic context

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    Sequence:
    NC_000913.3 (2418634..2419176, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphate acetyltransferase Neighboring gene putative transporter YfcC Neighboring gene phosphodiesterase YfcE Neighboring gene glutathione S-transferase YfcF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cryptic activity in the Nudix hydrolase superfamily. Bessman MJ. Protein Sci, 2019 Aug. PMID 31173659, Free PMC Article
    2. Confirmation of a Protein-Protein Interaction in the Pantothenate Biosynthetic Pathway by Using Sortase-Mediated Labelling. Morrison PM, et al. Chembiochem, 2016 Apr 15. PMID 26818742, Free PMC Article
    3. A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Zaslaver A, et al. Nat Methods, 2006 Aug. PMID 16862137
    4. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on acid anhydrides IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative Nudix hydrolase YfcD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2418634..2419176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416802.1 putative Nudix hydrolase YfcD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416802.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376J374
      Conserved Domains (1) summary
      PRK15393
      Location:1 → 180
      PRK15393; NUDIX hydrolase YfcD; Provisional
    Nucleotide Protein
    Heading Accession and Version

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