U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ypjF toxin of the YpjF-YfjZ toxin-antitoxin system [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947131, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ypjF
    Official Full Name
    toxin of the YpjF-YfjZ toxin-antitoxin system
    Primary source
    ECOCYC:G7381
    Locus tag
    b2646
    See related
    ASAP:ABE-0008711
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2643
    Summary
    ykfI, ypjF and yeeV are paralogs. [More information is available at EcoGene: EG14284]. Production of an artificially stabilized YpfJ tagged protein causes inhibition of cell growth, compared to wild type . [More information is available at EcoCyc: G7381].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2777453..2777782)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF987 domain-containing protein YpjJ Neighboring gene putative antitoxin of the YpjF-YfjZ toxin-antitoxin system Neighboring gene pseudo Neighboring gene adhesin-like autotransporter YpjA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. A novel family of Escherichia coli toxin-antitoxin gene pairs. Brown JM, et al. J Bacteriol, 2003 Nov. PMID 14594833, Free PMC Article
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    toxin of the YpjF-YfjZ toxin-antitoxin system

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2777453..2777782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417133.1 toxin of the YpjF-YfjZ toxin-antitoxin system [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417133.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q46953
      Conserved Domains (1) summary
      pfam06755
      Location:1 → 108
      CbtA_toxin; CbtA_toxin of type IV toxin-antitoxin system
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.