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    yggN DUF2884 domain-containing protein YggN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947453, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yggN
    Official Full Name
    DUF2884 domain-containing protein YggN
    Primary source
    ECOCYC:EG12705
    Locus tag
    b2958
    See related
    ASAP:ABE-0009706
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ecfF; ECK2953
    Summary
    First 20 aa are probable signal peptide. [More information is available at EcoGene: EG12705]. Transcription of yggN is induced upon biofilm formation compared to planktonic growth in exponential phase. [More information is available at EcoCyc: EG12705].
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    Genomic context

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    Sequence:
    NC_000913.3 (3100904..3101623, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1202 domain-containing protein YggM Neighboring gene L-asparaginase 2 Neighboring gene putative ribosome assembly factor YggL Neighboring gene tRNA m(7)G46 methyltransferase Neighboring gene adenine DNA glycosylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. L-asparaginase II of Escherichia coli K-12: cloning, mapping and sequencing of the ansB gene. Bonthron DT. Gene, 1990 Jul 2. PMID 2144836
    2. In vivo substrate specificity of periplasmic disulfide oxidoreductases. Hiniker A, et al. J Biol Chem, 2004 Mar 26. PMID 14726535
    3. Characterization of the Escherichia coli sigma E regulon. Dartigalongue C, et al. J Biol Chem, 2001 Jun 15. PMID 11274153
    4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    5. Analysis of the Escherichia coli gene encoding L-asparaginase II, ansB, and its regulation by cyclic AMP receptor and FNR proteins. Jennings MP, et al. J Bacteriol, 1990 Mar. PMID 2407723, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF2884 domain-containing protein YggN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3100904..3101623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417433.1 DUF2884 domain-containing protein YggN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417433.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3ENF4, A0A1L7AQM3, A0A418GGK2, A0A7I6H6H0, A7ZR82, B3Y172
      Conserved Domains (1) summary
      PRK10626
      Location:1 → 239
      PRK10626; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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