U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    dpiB sensor histidine kinase DpiB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945233, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    dpiB
    Official Full Name
    sensor histidine kinase DpiB
    Primary source
    ECOCYC:G6345
    Locus tag
    b0619
    See related
    ASAP:ABE-0002129
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    citA; ECK0612; mpdB; ybeP
    Summary
    An amber mutation has been generated . [More information is available at EcoCyc: G6345].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (652235..653893)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene citrate lyase beta subunit Neighboring gene citrate lyase acyl carrier protein Neighboring gene citrate lyase synthetase Neighboring gene DNA-binding transcriptional dual regulator DpiA Neighboring gene anaerobic C4-dicarboxylate transporter DcuC Neighboring gene Lipid A palmitoyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Polar accumulation of the metabolic sensory histidine kinases DcuS and CitA in Escherichia coli. Scheu P, et al. Microbiology (Reading), 2008 Aug. PMID 18667579
    2. Identification of a Shigella flexneri criR gene increasing ipa genes expression: a novel member of response regulators of the two-component signal transduction family. Qi MS, et al. Jpn J Med Sci Biol, 1996 Oct-Dec. PMID 9095416
    3. Destabilized inheritance of pSC101 and other Escherichia coli plasmids by DpiA, a novel two-component system regulator. Ingmer H, et al. Mol Microbiol, 1998 Jul. PMID 9701802
    4. The sensor kinase CitA (DpiB) of Escherichia coli functions as a high-affinity citrate receptor. Kaspar S, et al. Arch Microbiol, 2002 Apr. PMID 11889485
    5. A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system. Mandin P, et al. Mol Microbiol, 2009 May. PMID 19426207, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. DcuS/DcuR modulating citA and citB expression.
      Title: CitA/CitB two-component system regulating citrate fermentation in Escherichia coli and its relation to the DcuS/DcuR system in vivo.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables histidine phosphotransfer kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphorelay sensor kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphorelay sensor kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein histidine kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein histidine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphorelay signal transduction system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sensor histidine kinase DpiB
    NP_415152.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      652235..653893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415152.1 sensor histidine kinase DpiB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415152.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6D0I6Y6
      Conserved Domains (1) summary
      PRK15053
      Location:1 → 545
      dpiB; sensor histidine kinase DpiB; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.