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    ycgL PF05166 family protein YcgL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946226, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ycgL
    Official Full Name
    PF05166 family protein YcgL
    Primary source
    ECOCYC:G6616
    Locus tag
    b1179
    See related
    ASAP:ABE-0003954
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1167
    Summary
    YcgL is important for survival under competitive planktonic growth conditions . [More information is available at EcoCyc: G6616].
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    Genomic context

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    Sequence:
    NC_000913.3 (1227681..1228007)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF05666 family protein YcgJ Neighboring gene inhibitor of g-type lysozyme Neighboring gene protein YmgN Neighboring gene putative isomerase/hydrolase Neighboring gene putative metal-chelating domain-containing protein YcgN

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    2. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
    3. NMR structure of YcgL, a conserved protein from Escherichia coli representing the DUF709 family, with a novel alpha/beta/alpha sandwich fold. Minailiuc OM, et al. Proteins, 2007 Mar 1. PMID 17221885
    4. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

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    Preferred Names
    PF05166 family protein YcgL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1227681..1228007
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415697.5 PF05166 family protein YcgL [Escherichia coli str. K-12 substr. MG1655]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      B7N3Y3, B7UQ64
      UniProtKB/TrEMBL
      A0A1V2FXZ4, A0AAN3M8U8
      Conserved Domains (1) summary
      COG3100
      Location:1 → 104
      YcgL; Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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