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    abgR putative LysR-type DNA-binding transcriptional regulator AbgR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945831, updated on 3-Dec-2024

    Summary

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    Official Symbol
    abgR
    Official Full Name
    putative LysR-type DNA-binding transcriptional regulator AbgR
    Primary source
    ECOCYC:G6671
    Locus tag
    b1339
    See related
    ASAP:ABE-0004496
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1335
    Summary
    The abg operon is silent and an AbgR inducer has not been found (Hussein, 1998; Carter, 2007). [More information is available at EcoGene: EG13353]. AbgR may transcriptionally regulate expression of the abg operon . [More information is available at EcoCyc: G6671].
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    Genomic context

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    Sequence:
    NC_000913.3 (1404741..1405649)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene p-aminobenzoyl glutamate:H(+) symporter Neighboring gene p-aminobenzoyl-glutamate hydrolase subunit B Neighboring gene p-aminobenzoyl-glutamate hydrolase subunit A Neighboring gene ncRNA Neighboring gene DNA endonuclease SmrA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli abg genes enable uptake and cleavage of the folate catabolite p-aminobenzoyl-glutamate. Carter EL, et al. J Bacteriol, 2007 May. PMID 17307853, Free PMC Article
    2. Characterization of mutations that allow p-aminobenzoyl-glutamate utilization by Escherichia coli. Hussein MJ, et al. J Bacteriol, 1998 Dec. PMID 9829935, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative LysR-type DNA-binding transcriptional regulator AbgR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1404741..1405649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415855.1 putative LysR-type DNA-binding transcriptional regulator AbgR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415855.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7D7IVZ3, A0AAI9E724
      Conserved Domains (1) summary
      PRK09791
      Location:1 → 302
      PRK09791; LysR family transcriptional regulator
    Nucleotide Protein
    Heading Accession and Version

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