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    ygbN putative transporter YgbN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947208, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygbN
    Official Full Name
    putative transporter YgbN
    Primary source
    ECOCYC:G7421
    Locus tag
    b2740
    See related
    ASAP:ABE-0008999
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2735
    Summary
    IT (Ion Transporter) superfamily (Prakash, 2003). [More information is available at EcoGene: EG13108]. YgbN is a transporter of unknown function belonging to the Gnt family of gluconate transporters . [More information is available at EcoCyc: G7421].
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    Genomic context

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    Sequence:
    NC_000913.3 (2865101..2866465)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 3-oxo-tetronate 4-phosphate decarboxylase YgbL Neighboring gene putative 2-oxo-tetronate isomerase YgbM Neighboring gene RNA polymerase sigma factor RpoS Neighboring gene murein hydrolase activator NlpD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Domain structure and pore loops in the 2-hydroxycarboxylate transporter family. Lolkema JS. J Mol Microbiol Biotechnol, 2006. PMID 17114896
    2. Sequence and hydropathy profile analysis of two classes of secondary transporters. Lolkema JS, et al. Mol Membr Biol, 2005 May-Jun. PMID 16096261
    3. The ion transporter superfamily. Prakash S, et al. Biochim Biophys Acta, 2003 Dec 3. PMID 14643936
    4. Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis. Lolkema JS, et al. J Mol Biol, 2003 Apr 11. PMID 12662917
    5. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables gluconate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in gluconate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transporter YgbN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2865101..2866465
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417220.1 putative transporter YgbN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417220.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5YLI5
      Conserved Domains (1) summary
      PRK09821
      Location:1 → 454
      PRK09821; putative transporter; Provisional
    Nucleotide Protein
    Heading Accession and Version

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