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    yhdV lipoprotein YhdV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947767, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhdV
    Official Full Name
    lipoprotein YhdV
    Primary source
    ECOCYC:G7695
    Locus tag
    b3267
    See related
    ASAP:ABE-0010728
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3254
    Summary
    First 16 aa are a type II signal peptide. [More information is available at EcoGene: EG12833].
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    Genomic context

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    Sequence:
    NC_000913.3 (3418390..3418611)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene multidrug efflux pump membrane fusion lipoprotein AcrE Neighboring gene multidrug efflux pump RND permease AcrF Neighboring gene pseudo Neighboring gene putative ABC transporter membrane subunit YhdX

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lipoprotein YhdV

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3418390..3418611
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417733.1 lipoprotein YhdV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417733.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377JZ13
      Conserved Domains (1) summary
      pfam08139
      Location:1 → 19
      LPAM_1; Prokaryotic membrane lipoprotein lipid attachment site
    Nucleotide Protein
    Heading Accession and Version

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