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    rsmJ 16S rRNA m(2)G1516 methyltransferase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948005, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rsmJ
    Official Full Name
    16S rRNA m(2)G1516 methyltransferase
    Primary source
    ECOCYC:EG12233
    Locus tag
    b3497
    See related
    ASAP:ABE-0011419
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3482; yhiQ
    Summary
    In Salmonella, yhiQ is the second gene in prlC operon and is in the heat shock regulon. [More information is available at EcoGene: EG12233]. The opdA-yhiQ operon of Salmonella enterica serovar Typhimurium is regulated by heat shock . [More information is available at EcoCyc: EG12233].
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    Genomic context

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    Sequence:
    NC_000913.3 (3642380..3643132, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YriA Neighboring gene protein YriB Neighboring gene dipeptide/tripeptide:H(+) symporter DtpB Neighboring gene oligopeptidase A Neighboring gene 23S rRNA m(6)A2030 methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli. Basturea GN, et al. J Mol Biol, 2012 Jan 6. PMID 22079366, Free PMC Article
    2. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. Zhao K, et al. J Biol Chem, 2005 May 6. PMID 15757896
    3. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article
    4. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article
    5. opdA, a Salmonella enterica serovar Typhimurium gene encoding a protease, is part of an operon regulated by heat shock. Conlin CA, et al. J Bacteriol, 2000 Jan. PMID 10629202, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 16S rRNA (guanine(1516)-N(2))-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (guanine-N2-)-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rRNA (guanine-N2-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within rRNA base methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    16S rRNA m(2)G1516 methyltransferase
    NP_417954.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3642380..3643132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417954.1 16S rRNA m(2)G1516 methyltransferase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417954.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1IU79
      Conserved Domains (1) summary
      PRK10742
      Location:1 → 250
      PRK10742; 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ
    Nucleotide Protein
    Heading Accession and Version

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