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    intF putative phage integrase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947351, updated on 17-Dec-2024

    Summary

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    Official Symbol
    intF
    Official Full Name
    putative phage integrase
    Primary source
    ECOCYC:G6152
    Locus tag
    b0281
    See related
    ASAP:ABE-0000979
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0280; yagO
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    Genomic context

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    Sequence:
    NC_000913.3 (295696..297096, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YagM Neighboring gene protein YkgV Neighboring gene protein YagN Neighboring gene putative LysR family substrate binding domain-containing protein YagP Neighboring gene molybdenum cofactor insertion chaperone PaoD Neighboring gene aldehyde dehydrogenase: molybdenum cofactor-binding subunit Neighboring gene aldehyde dehydrogenase, FAD-binding subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Sargentini NJ, et al. Mutat Res, 2016 Nov-Dec. PMID 27718375
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables prophage integrase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in establishment of integrated proviral latency IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in provirus excision IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within response to X-ray IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in viral genome integration into host DNA IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative phage integrase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      295696..297096 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414815.1 putative phage integrase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414815.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAW9X944
      Conserved Domains (2) summary
      pfam13356
      Location:65 → 113
      Arm-DNA-bind_3; Arm DNA-binding domain
      cl00213
      Location:276 → 447
      DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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