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    rimO ribosomal protein S12 methylthiotransferase RimO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945465, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rimO
    Official Full Name
    ribosomal protein S12 methylthiotransferase RimO
    Primary source
    ECOCYC:G6435
    Locus tag
    b0835
    See related
    ASAP:ABE-0002843
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0825; yliG
    Summary
    AFMB Structural Genomics target Number 13 (http://afmb.cnrs-mrs.fr/article171.html). rimO and miaB are paralogs. [More information is available at EcoGene: EG13478]. RimO appears to be the methyltransferase responsible for methylthiolation of the carbon of the D88 residue of |FRAME: [More information is available at EcoCyc: G6435].
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    Genomic context

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    Sequence:
    NC_000913.3 (876710..878035, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative c-di-GMP phosphodiesterase PdeI Neighboring gene putative diguanylate cyclase DgcI Neighboring gene regulator of biofilm formation Neighboring gene aldose sugar dehydrogenase YliI Neighboring gene glutathione S-transferase GstB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli. Anton BP, et al. Proc Natl Acad Sci U S A, 2008 Feb 12. PMID 18252828, Free PMC Article
    2. Beta-methylthio-aspartic acid: identification of a novel posttranslational modification in ribosomal protein S12 from Escherichia coli. Kowalak JA, et al. Protein Sci, 1996 Aug. PMID 8844851, Free PMC Article
    3. New light on methylthiolation reactions. Fontecave M, et al. Chem Biol, 2008 Mar. PMID 18355719
    4. A proteomic and transcriptomic approach reveals new insight into beta-methylthiolation of Escherichia coli ribosomal protein S12. Strader MB, et al. Mol Cell Proteomics, 2011 Mar. PMID 21169565, Free PMC Article
    5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables 4 iron, 4 sulfur cluster binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables aspartic acid methylthiotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables aspartic acid methylthiotransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables aspartic acid methylthiotransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables methylthiotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein methylthiotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal protein S12 methylthiotransferase RimO
    NP_415356.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      876710..878035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415356.1 ribosomal protein S12 methylthiotransferase RimO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415356.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1KN10
      Conserved Domains (1) summary
      PRK14862
      Location:1 → 441
      rimO; 30S ribosomal protein S12 methylthiotransferase RimO
    Nucleotide Protein
    Heading Accession and Version

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