U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rcdA RcdA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945473, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rcdA
    Official Full Name
    RcdA
    Primary source
    ECOCYC:G6444
    Locus tag
    b0846
    See related
    ASAP:ABE-0002885
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0836; ybjK
    Summary
    TetR family. [More information is available at EcoGene: EG13680].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (887423..887959)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase Neighboring gene inner membrane protein YbjJ Neighboring gene ncRNA Neighboring gene putative transport protein YbjL

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands. Pietrzyk-Brzezinska AJ, et al. Proteins, 2022 Jan. PMID 34288132
    2. A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli. Shimada T, et al. Microbiologyopen, 2012 Dec. PMID 23233451, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands.
      Title: Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RcdA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      887423..887959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415367.1 RcdA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415367.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A444RHC0
      Conserved Domains (1) summary
      COG3226
      Location:1 → 178
      YbjK; DNA-binding transcriptional regulator YbjK [Transcription]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.