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    ycjR 3-dehydro-D-guloside 4-epimerase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947427, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycjR
    Official Full Name
    3-dehydro-D-guloside 4-epimerase
    Primary source
    ECOCYC:G6652
    Locus tag
    b1314
    See related
    ASAP:ABE-0004414
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    dte; ECK1309
    Summary
    Part of the putative ycjM-V operon, which encodes a putative transport and catabolism system for an unknown sugar. [More information is available at EcoGene: EG13915].
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    Genomic context

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    Sequence:
    NC_000913.3 (1376034..1376822)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter membrane subunit YcjO Neighboring gene putative ABC transporter membrane subunit YcjP Neighboring gene D-guloside 3-dehydrogenase Neighboring gene D-glucoside 3-dehydrogenase Neighboring gene kojibiose phosphorylase Neighboring gene beta-phosphoglucomutase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure and Reaction Mechanism of YcjR, an Epimerase That Facilitates the Interconversion of d-Gulosides to d-Glucosides in Escherichia coli. Mabanglo MF, et al. Biochemistry, 2020 Jun 9. PMID 32437133, Free PMC Article
    2. Functional Characterization of the ycjQRS Gene Cluster from Escherichia coli: A Novel Pathway for the Transformation of d-Gulosides to d-Glucosides. Mukherjee K, et al. Biochemistry, 2019 Mar 12. PMID 30742415, Free PMC Article
    3. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
    4. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    5. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Structure and Reaction Mechanism of YcjR, an Epimerase That Facilitates the Interconversion of d-Gulosides to d-Glucosides in Escherichia coli.
      Title: Structure and Reaction Mechanism of YcjR, an Epimerase That Facilitates the Interconversion of d-Gulosides to d-Glucosides in Escherichia coli.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables manganese ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables racemase and epimerase activity, acting on carbohydrates and derivatives IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-dehydro-D-guloside 4-epimerase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1376034..1376822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415830.2 3-dehydro-D-guloside 4-epimerase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415830.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376X2D5
      Conserved Domains (1) summary
      COG1082
      Location:1 → 262
      YcjR; Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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